GEOS-Chem Classic folder tree
The tables below list the folders in which various components of GEOS-Chem Classic reside.
GCClassic
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+---CMakeScripts # Utility functions for CMake
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+---docs # Root directory for ReadTheDocs documentation
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| +---source # Subdivides documentation into subdirectories
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| +---gcclassic-user-guide # Markup files (ReST format) for ReadTheDocs
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| +---geos-chem-shared-docs # Submodule containing shared documentation files
| | # (such as common supplemental guides)
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| +---getting-started # Markup files (reST format) for ReadTheDocs
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| +---help-and-reference # Markup files (reST format) for ReadTheDocs
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| +---_static # Static content (e.g. images) for ReadTheDocs
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| +---supplemental-guides # Markup files (reST format) for ReadTheDocs
| # (Content specific to GEOS-Chem Classic)
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+---run # Link to src/GEOS-Chem/run/GCClassic
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+---src # Contains submodules used by GEOS-Chem Classic
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| +---Cloud-J # Cloud-J submodule source code
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| | +---CMakeScripts # Utility functions for CMake
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| | +---docs # Cloud-J documentation files
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| | +---src # Cloud-J source code
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| | +---tables # Input lookup tables for Cloud-J
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| | +---tools # Tools for Cloud-J
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| | +---AddXs # Source code to add new cross-sections
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| +---GEOS_Chem # GEOS-Chem submodule, contains
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| | +---APM # Source code for APM microphysics module
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| | +---CMakeScripts # Utility functions for CMake
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| | +---GeosCore # Source code for most GEOS-Chem science routines
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| | +---GeosRad # RRTMG radiative transfer model source code
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| | +---GeosUtil # Source code for various utility routines
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| | +---GTMM # Global Terrestrial Mercury Model source code
| | | # (NOTE: This feature has fallen into disuse)
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| | +---Headers # Source code for defining the GEOS-Chem state objects
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| | +---History # Source code for History diagnostics
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| | +---Interfaces # Driver code for various implementations of GEOS-Chem
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| | | +---CESM # Source code to connect GEOS-Chem to CESM
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| | | +---GCClassic # "Main program" source code for GEOS-Chem Classic
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| | | +---GCHP # "Main program" source code for GCHP
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| | | +---GEOS # Source code to connect GEOS-Chem in the NASA GEOS ESM
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| | +---KPP # Root folder KPP-generated solver code
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| | | +---carbon # KPP-generated code for the carbon mechanism
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| | | +---custom # "Sandbox" for generating custom mechanisms
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| | | +---fullchem # KPP-generated code for the full-chemistry mechanism
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| | | +---Hg # KPP-generated code for the mercury (Hg) mechanism
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| | +---NcdfUtil # Source code for netCDF file I/O
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| | +---ObsPack # Source code for the ObsPack diagnostic
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| | +---PKUCPL # Source code for PKU two way coupler
| | | # (NOTE: This feature has fallen into disuse)
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| | +---run # Root folder for run directory creation scripts
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| | | +---CESM # Rundir creation scripts/files for CESM
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| | | +---GCClassic # Rundir creation scripts/files for GEOS-CHem Classic
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| | | +---GCHP # Rundir creation scripts/files for GCHP
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| | | +---GEOS # Rundir creation scripts/files for NASA GEOS ESM
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| | | +---shared # Common scripts and configuration file snippets
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| | | +---WRF # Rundir creation scripts/files for WRF-GC
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| | +---test # Root folder for integration test scripts
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| | +---difference # Scripts to compare the results of two integrationtests
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| | +---integration # Top-level integration test folder
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| | | +---GCClassic # Scripts to run integration tests for GEOS-Chem Classic
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| | | +---GCHP # Scripts to run integration tests for GCHP
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| | +---parallel # Top-level parallelization test folder
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| | | +---GCClassic # Scripts to run parallel tests for GEOS-Chem Classic
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| | +---shared # Common scripts for integration & parallel tests
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| +---HEMCO # Harmonized Emissions Component (HEMCO) submodule
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| | +---CMakeScripts # Utility functions for CMake
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| | +---docs # Root directory for ReadTheDocs documentation
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| | | +---source # Subdivides documentation into subdirectories
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| | | +---coupling # Markup files (ReST format) for ReadTheDocs
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| | | +---geos-chem-shared-docs # Submodule containing shared documentation files
| | | | # (such as common supplemental guides)
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| | | +---hco-ref-guide # Markup files (reST format) for ReadTheDocs
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| | | +---hco-sa-guide # Markup files (reST format) for ReadTheDocs
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| | | +---reference # Markup files (reST format) for ReadTheDocs
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| | | +---_static # Static content (e.g. images) for ReadTheDocs
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| | +---run # Rundir creation scripts/files for HEMCO standalone
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| | +---src # Top-level source code folder
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| | +---Core # Source code for core HEMCO routines
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| | +---Extensions # Source code for HEMCO extensions
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| | | +---PreProcess # Scripts for creating the FINN or GFED include file
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| | +---Interfaces # Driver programs for the various HEMCO implementations
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| | | +--GEOS # Source code to connect HEMCO to the NASA GEOS ESM
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| | | +--MAPL_ESMF # Source code to run HEMCO in the ESMF/MAPL environment
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| | | +--Shared # Common files for run directory creation
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| | | +--Standalone # "Main Program" for the HEMCO standalone model
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| | +---Shared # Top-level folder for shared code
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| | +---GeosUtil # Local copies of source code in GEOS-Chem/GeosUtil
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| | +---Headers # Local copies of source code in GEOS-Chem/Headers
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| | +---NcdfUtil # Local copies of source code in GEOS-Chem/NcdfUtil
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| +---HETP # ISORROPIA/HETP submodule source code
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| +---CMakeScripts # Utility functions for CMake
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| +---Core # Source code for HETP
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| +---Test # "Main program" for testing HETP in standalone mode
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+---spack # Link to docs/source/geos-chem-shared-docs/spack
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+---test # Link to src/GEOS-Chem/test